Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6897

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15264 and 15265 are separated by 620 nucleotides15265 and 15266 are separated by 410 nucleotides mRNA_6896: 15264 - KOG1399 Flavin-containing monooxygenase, at 380,305 to 381,908 15264 mRNA_6897: 15265 - Hypothetical Protein, at 382,529 to 383,336 15265 mRNA_6898: 15266 - HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,SUPERFAMILY--SSF52833, at 383,747 to 384,768 15266

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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381,603 + 15264 mRNA_6896 0.81 -0.4
381,697 - 15264 mRNA_6896 0.87 +1.3
381,702 - 15264 mRNA_6896 0.87 +0.0
382,017 + -0.2
382,147 + +0.1
382,149 - +1.8
382,181 - -1.5
382,188 - -1.6
382,196 + +1.1
382,221 + +0.5
382,237 + -0.4
382,238 - +1.2
382,238 - +0.1
382,243 + -0.3
382,251 + +0.5
382,261 + +1.1
382,261 - -0.2
382,264 + +0.3
382,264 - -0.1
382,268 + +0.0
382,269 + +0.0
382,270 + -0.5
382,272 + +1.0
382,277 - +0.5
382,295 + -0.9
382,306 - +0.5
382,309 + +0.9
382,310 - +0.1
382,311 - +0.2
382,325 - -1.8
382,337 + +0.5
382,339 + -1.7
382,340 + -2.5
382,342 - -1.7
382,344 + -2.2
382,351 + +0.2
382,379 + +0.4
382,471 + +0.5
382,490 + +0.4
382,494 + -0.7
382,499 - +1.5
382,508 + -0.2
382,512 + -0.0
382,513 + -0.8
382,535 + -0.4
382,652 - 15265 mRNA_6897 0.15 +0.3
382,662 + 15265 mRNA_6897 0.16 +1.7
382,662 + 15265 mRNA_6897 0.16 +1.9
382,769 - 15265 mRNA_6897 0.30 +0.2
382,954 + 15265 mRNA_6897 0.53 +2.0
383,044 + 15265 mRNA_6897 0.64 +0.4
383,056 - 15265 mRNA_6897 0.65 -0.9
383,080 + 15265 mRNA_6897 0.68 -1.2
383,192 - 15265 mRNA_6897 0.82 -0.9
383,327 + -0.1
383,332 - -0.1
383,361 - -0.9
383,398 - -0.1
383,508 - +0.7
383,632 - +1.3
383,636 + +0.6
383,644 + -0.2
383,937 + 15266 mRNA_6898 0.19 -0.9
383,951 - 15266 mRNA_6898 0.20 -0.3
383,964 - 15266 mRNA_6898 0.21 +1.0
384,097 + 15266 mRNA_6898 0.34 +0.8
384,250 + 15266 mRNA_6898 0.49 +1.1
384,255 - 15266 mRNA_6898 0.50 +0.5
384,269 + 15266 mRNA_6898 0.51 +1.1

Or see this region's nucleotide sequence