Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6903

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15270 and 15271 are separated by 434 nucleotides15271 and 15272 are separated by 227 nucleotides mRNA_6902: 15270 - HMMPfam-Fungal family of unknown function (DUF1776)-PF08643,SUPERFAMILY--SSF51735, at 390,939 to 393,309 15270 mRNA_6903: 15271 - Hypothetical Protein, at 393,744 to 394,954 15271 mRNA_6904: 15272 - HMMPfam-CTLH/CRA C-terminal to LisH motif domain-PF10607,ProSiteProfiles-LIS1 homology (LisH) motif profile.-PS50896,SMART-CT11-RanBPM-SM00757, at 395,182 to 396,886 15272

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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392,931 + 15270 mRNA_6902 0.84 -0.2
393,188 - +0.2
393,402 - +0.3
393,490 + +1.4
393,510 - +0.1
393,655 - -1.1
393,811 - +0.4
393,934 + 15271 mRNA_6903 0.16 +1.5
394,192 - 15271 mRNA_6903 0.37 +1.8
394,231 - 15271 mRNA_6903 0.40 +0.8
394,278 + 15271 mRNA_6903 0.44 -0.7
394,980 - +0.7
395,167 + +1.1
395,438 + 15272 mRNA_6904 0.15 -0.4
395,565 - 15272 mRNA_6904 0.22 -0.5
395,578 + 15272 mRNA_6904 0.23 -0.1

Or see this region's nucleotide sequence