Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6912

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15279 and 15280 are separated by 237 nucleotides mRNA_6911: 15279 - K03660 OGG1 N-glycosylase/DNA lyase, at 415,549 to 417,203 15279 mRNA_6912: 15280 - K12833 SF3B14 pre-mRNA branch site protein p14, at 417,441 to 418,066 15280

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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416,651 - 15279 mRNA_6911 0.67 +0.8
416,663 - 15279 mRNA_6911 0.67 +1.6
416,937 - 15279 mRNA_6911 0.84 -0.3
418,391 - +2.7
418,552 - -0.6
418,673 + +1.2
418,688 + -0.5
418,969 + +1.2

Or see this region's nucleotide sequence