Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6913

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15281 and 15282 are separated by 715 nucleotides mRNA_6913: 15281 - Hypothetical Protein, at 419,561 to 420,635 15281 mRNA_6914: 15282 - KOG0254 Predicted transporter (major facilitator superfamily), at 421,351 to 423,576 15282

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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418,673 + +1.2
418,688 + -0.5
418,969 + +1.2
419,095 + -0.3
419,100 - +0.7
419,258 - +0.0
419,275 + +0.4
419,550 + +1.5
419,563 + +0.1
419,718 - 15281 mRNA_6913 0.15 -0.4
419,800 - 15281 mRNA_6913 0.22 -0.6
419,864 - 15281 mRNA_6913 0.28 +0.1
419,864 + 15281 mRNA_6913 0.28 -0.2
420,156 - 15281 mRNA_6913 0.55 -0.0
420,278 - 15281 mRNA_6913 0.67 +1.3
420,684 + +1.0
421,146 + -0.9
421,286 - -0.6
421,289 + -0.2

Or see this region's nucleotide sequence