Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6937

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15304 and 15305 are separated by 585 nucleotides15305 and 15306 are separated by 113 nucleotides mRNA_6936: 15304 - K09669 FUT10 alpha-1,3-fucosyltransferase 10, at 473,933 to 475,521 15304 mRNA_6937: 15305 - K03781 katE, CAT, catB, srpA catalase, at 476,107 to 478,851 15305 mRNA_6938: 15306 - SUPERFAMILY--SSF56801, at 478,965 to 480,801 15306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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475,134 - 15304 mRNA_6936 0.76 +2.3
475,259 - 15304 mRNA_6936 0.83 +0.1
475,532 - +1.2
475,533 + -0.1
475,556 - -0.7
475,587 - -0.7
475,736 + +0.1
475,862 + +0.7
475,869 + +0.4
476,163 + -0.3
476,289 + +0.8
476,560 + 15305 mRNA_6937 0.17 -0.2
476,721 - 15305 mRNA_6937 0.22 -0.0
477,079 + 15305 mRNA_6937 0.35 +1.5
477,144 - 15305 mRNA_6937 0.38 +1.1
477,280 - 15305 mRNA_6937 0.43 +1.2
477,735 - 15305 mRNA_6937 0.59 +0.1
478,050 - 15305 mRNA_6937 0.71 +1.2
478,137 + 15305 mRNA_6937 0.74 -0.2
478,172 + 15305 mRNA_6937 0.75 +0.6
478,337 + 15305 mRNA_6937 0.81 -1.0
478,482 + 15305 mRNA_6937 0.87 +0.2
478,580 - -0.6
478,930 - +0.6
479,067 - +0.1

Or see this region's nucleotide sequence