Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6939

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15306 and 15307 are separated by 175 nucleotides15307 and 15308 are separated by 68 nucleotides mRNA_6938: 15306 - SUPERFAMILY--SSF56801, at 478,965 to 480,801 15306 mRNA_6939: 15307 - K17973 NAA25, MDM20 N-terminal acetyltransferase B complex non-catalytic subunit, at 480,977 to 484,798 15307 mRNA_6940: 15308 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 484,867 to 487,020 15308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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480,128 + 15306 mRNA_6938 0.63 -0.2
480,587 + 15306 mRNA_6938 0.88 +0.5
480,694 - -0.7
480,728 + +2.8
480,868 + -0.1
480,872 + -0.2
480,875 + +0.6
480,880 + +0.0
481,155 + -0.6
481,156 - -2.3
481,177 - -0.7
481,219 - +1.9
481,326 + +1.8
485,148 - 15308 mRNA_6940 0.13 -1.0
485,160 + 15308 mRNA_6940 0.14 -0.4
485,379 + 15308 mRNA_6940 0.24 -0.6

Or see this region's nucleotide sequence