Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6942

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15309 and 15310 are separated by 127 nucleotides15310 and 15311 are separated by 187 nucleotides mRNA_6941: 15309 - K02154 ATPeV0A, ATP6N V-type H+-transporting ATPase subunit a, at 487,367 to 491,016 15309 mRNA_6942: 15310 - K15029 EIF3L translation initiation factor 3 subunit L, at 491,144 to 493,608 15310 mRNA_6943: 15311 - SUPERFAMILY--SSF52047, at 493,796 to 495,109 15311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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491,071 + +0.4
491,078 + +0.3
491,091 - -0.1
491,109 + +0.0
491,112 - +1.4
491,116 + -0.3
491,254 + +2.2
491,838 - 15310 mRNA_6942 0.28 +1.6
491,953 - 15310 mRNA_6942 0.33 +0.7
491,997 - 15310 mRNA_6942 0.35 -1.1
492,142 + 15310 mRNA_6942 0.40 +1.0
493,289 - 15310 mRNA_6942 0.87 +1.0
493,292 + 15310 mRNA_6942 0.87 -1.0
493,434 - +1.7
493,440 + +0.6
493,506 + +0.1
493,854 - +1.1
493,894 + +0.5
494,151 - 15311 mRNA_6943 0.27 -0.5
494,172 + 15311 mRNA_6943 0.29 +0.0
494,444 + 15311 mRNA_6943 0.49 +2.3

Or see this region's nucleotide sequence