Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6948

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15316 and 15317 are separated by 385 nucleotides mRNA_6948: 15316 - BLAST putative ephrin type-a receptor 8-like protein [Botry..., at 505,314 to 506,461 15316 mRNA_6949: 15317 - HMMPfam-Cenp-O kinetochore centromere component-PF09496, at 506,847 to 507,636 15317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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504,343 - +0.6
504,348 + -0.0
504,423 + +1.4
504,482 + +2.5
504,483 + -0.2
504,486 - -0.5
504,486 - -0.3
504,582 + +0.2
504,630 + +0.3
504,698 - +0.7
504,772 + +0.7
504,775 + +1.0
504,798 + -0.3
504,799 + -0.0
504,799 + +0.9
504,799 + -0.3
504,906 - -0.9
505,082 - +0.2
505,086 + +0.1
505,087 - +0.9
505,097 - -1.1
505,103 + +0.8
505,227 - -0.6
505,381 + -0.4
505,664 - 15316 mRNA_6948 0.30 -0.3
505,678 + 15316 mRNA_6948 0.32 +1.7
505,687 - 15316 mRNA_6948 0.32 +2.4
505,829 - 15316 mRNA_6948 0.45 +0.1
506,113 + 15316 mRNA_6948 0.70 -0.1
506,114 + 15316 mRNA_6948 0.70 +1.2
506,400 + -0.0
506,408 + -0.2
506,415 - +1.0
506,426 + -1.1
506,539 + -0.6
506,539 - -0.7
506,549 - -0.7
506,560 - +0.6
506,568 - +0.4
506,570 + +0.5
506,575 + +0.3
506,575 + +0.4
506,582 - +1.6
506,588 + -1.9
506,652 - -0.6
506,655 + +2.1
506,672 - -0.2
506,679 + +0.0
506,695 + -0.9
506,713 - +0.5
506,849 + -1.6
506,970 + 15317 mRNA_6949 0.16 -0.2
506,980 - 15317 mRNA_6949 0.17 +2.4
506,987 - 15317 mRNA_6949 0.18 -0.3

Or see this region's nucleotide sequence