Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6991

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15358 and 15359 are separated by 643 nucleotides15359 and 15360 are separated by 352 nucleotides mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615,563 to 617,347 15358 mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617,991 to 620,077 15359 mRNA_6992: 15360 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 620,430 to 622,573 15360

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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617,141 + 15358 mRNA_6990 0.88 +0.2
617,427 + +2.6
617,499 + -1.6
617,501 - +1.0
617,516 - +0.5
617,536 - -0.5
617,542 + -1.0
617,560 - -0.9
617,567 - +1.9
617,570 - -0.4
617,575 + +0.5
617,576 - -0.2
617,577 - +1.6
617,581 - -1.0
617,582 + +0.2
617,583 + -0.1
617,584 + +0.3
617,590 - +1.3
617,595 + +0.8
617,603 - -0.4
617,610 - +1.6
617,676 - -0.9
617,689 - +0.2
617,694 + +0.5
617,853 - -0.2
618,121 + -1.4
618,140 - -0.4
618,156 - -0.1
618,169 + +0.6
618,309 - 15359 mRNA_6991 0.15 -0.9
618,313 + 15359 mRNA_6991 0.15 -0.2
618,475 + 15359 mRNA_6991 0.23 +0.8
618,732 - 15359 mRNA_6991 0.36 +0.3
619,045 + 15359 mRNA_6991 0.51 -0.9
619,575 + 15359 mRNA_6991 0.76 +0.8
619,923 - -0.6
619,928 + +0.2
620,080 - -1.5
620,085 + +1.8
620,106 - -0.7
620,115 + +0.9
620,494 - +0.3
620,513 - -0.4
620,523 - +1.9
620,541 + +0.1
620,633 + +0.3
620,653 - 15360 mRNA_6992 0.10 -0.1
620,664 - 15360 mRNA_6992 0.11 +1.6
620,676 + 15360 mRNA_6992 0.11 -0.1

Or see this region's nucleotide sequence