Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7009

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15376 and 15377 are separated by 168 nucleotides15377 and 15378 are separated by 470 nucleotides mRNA_7008: 15376 - Hypothetical Protein, at 661,061 to 661,645 15376 mRNA_7009: 15377 - Hypothetical Protein, at 661,814 to 663,427 15377 mRNA_7010: 15378 - Hypothetical Protein, at 663,898 to 666,099 15378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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660,814 + -1.5
660,824 - -0.0
660,829 + -0.5
660,835 + +0.4
660,842 - -0.2
660,843 + +0.6
660,847 + +0.4
660,851 + +1.6
660,910 + +0.5
660,919 - +1.0
660,923 - +1.5
660,936 + -0.2
660,949 + -0.2
660,960 + -0.6
660,982 + -0.5
661,131 - 15376 mRNA_7008 0.12 +0.6
661,280 + 15376 mRNA_7008 0.37 -0.3
661,283 + 15376 mRNA_7008 0.38 +0.5
661,285 - 15376 mRNA_7008 0.38 +1.2
661,304 - 15376 mRNA_7008 0.42 +0.8
661,381 - 15376 mRNA_7008 0.55 -0.3
661,500 + 15376 mRNA_7008 0.75 +0.9
661,622 + -0.6
661,647 + +1.5
661,716 + +0.5
661,739 - -0.4
661,763 + +1.5
661,769 + -0.0
661,773 - -0.6
661,776 + -1.1
661,784 + +0.9
661,789 + -0.7
661,797 - +1.3
661,846 - -0.2
661,853 - +1.2
661,893 - +0.2
661,914 - +0.1
661,927 - -0.0
661,940 - +0.1
662,181 + 15377 mRNA_7009 0.23 -0.4
662,210 - 15377 mRNA_7009 0.25 -0.5
662,212 - 15377 mRNA_7009 0.25 +0.2
662,339 - 15377 mRNA_7009 0.33 +0.4
662,349 - 15377 mRNA_7009 0.33 +0.6
662,647 + 15377 mRNA_7009 0.52 -0.3
662,655 + 15377 mRNA_7009 0.52 +0.1
663,079 - 15377 mRNA_7009 0.78 +0.4
663,085 - 15377 mRNA_7009 0.79 +0.8
663,245 + 15377 mRNA_7009 0.89 -0.7
663,376 + +1.1
663,384 - +0.4
663,532 - -0.3
663,532 + -0.4
663,562 + +0.0
663,583 + -0.7
663,681 - -1.5
663,830 + +0.6
663,850 + +1.0
663,856 + +1.2
663,859 + +0.7
663,868 - -0.4
663,877 + +0.9
663,880 + -0.5
663,896 + +0.0

Or see this region's nucleotide sequence