Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7019

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15386 and 15387 are separated by 216 nucleotides15387 and 15388 are separated by 194 nucleotides mRNA_7018: 15386 - Hypothetical Protein, at 684,817 to 685,871 15386 mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686,088 to 688,034 15387 mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688,229 to 691,595 15388

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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685,457 + 15386 mRNA_7018 0.61 +0.0
685,607 - 15386 mRNA_7018 0.75 -0.2
685,742 - 15386 mRNA_7018 0.88 -0.6
685,752 + 15386 mRNA_7018 0.89 -0.5
685,754 + 15386 mRNA_7018 0.89 +0.9
685,866 - -0.1
686,054 + +0.2
686,061 + +0.7
687,471 - 15387 mRNA_7019 0.71 +0.2
687,486 - 15387 mRNA_7019 0.72 +0.2
688,080 + +3.3
688,203 - +1.3
688,220 + +2.1
688,493 - -1.4
688,667 + 15388 mRNA_7020 0.13 -0.9
688,806 - 15388 mRNA_7020 0.17 -0.2

Or see this region's nucleotide sequence