Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7029

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15396 and 15397 are separated by 256 nucleotides15397 and 15398 are separated by 559 nucleotides mRNA_7028: 15396 - SUPERFAMILY--SSF81383, at 707,580 to 708,539 15396 mRNA_7029: 15397 - Hypothetical Protein, at 708,796 to 709,745 15397 mRNA_7030: 15398 - SUPERFAMILY--SSF50685, at 710,305 to 711,678 15398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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708,035 - 15396 mRNA_7028 0.47 +0.3
708,169 + 15396 mRNA_7028 0.61 +0.5
708,603 - +1.5
708,637 + -0.3
708,644 + +0.2
708,648 - -0.2
708,648 - -1.0
708,648 - +0.2
708,649 - +1.1
708,666 - +2.1
708,689 + +0.1
708,937 - 15397 mRNA_7029 0.15 -0.2
708,989 - 15397 mRNA_7029 0.20 +2.3
709,076 - 15397 mRNA_7029 0.29 +1.4
709,076 - 15397 mRNA_7029 0.29 -0.0
709,110 - 15397 mRNA_7029 0.33 +0.3
709,495 - 15397 mRNA_7029 0.74 -0.7
709,657 + +0.5
709,667 - -2.6
709,673 - +2.9
709,676 - -0.3
709,693 + +1.3
709,807 - -0.3
709,834 - -1.6
709,840 - -3.1
709,841 - -0.1
709,867 - -0.9
709,881 + +2.5
709,883 + -0.6
709,970 - +2.2
709,982 + -1.0
709,987 + -0.2

Or see this region's nucleotide sequence