Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7036

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15403 and 15404 are separated by 874 nucleotides15404 and 15405 are separated by 120 nucleotides mRNA_7035: 15403 - K11826 AP2M1 AP-2 complex subunit mu-1, at 718,322 to 720,163 15403 mRNA_7036: 15404 - K00831 serC, PSAT1 phosphoserine aminotransferase, at 721,038 to 722,425 15404 mRNA_7037: 15405 - K08254 E3.2.1.59 glucan endo-1,3-alpha-glucosidase, at 722,546 to 724,803 15405

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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720,492 + +0.0
720,649 - +0.5
720,777 - -0.1
720,795 - -0.0
722,452 - +2.3
722,564 - +0.2
722,723 - -0.4
722,882 - 15405 mRNA_7037 0.15 +0.2
723,074 - 15405 mRNA_7037 0.23 +0.2

Or see this region's nucleotide sequence