Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7062

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15429 and 15430 are separated by 293 nucleotides15430 and 15431 are separated by 11 nucleotides mRNA_7061: 15429 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 789,472 to 792,234 15429 mRNA_7062: 15430 - HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001, at 792,528 to 793,710 15430 mRNA_7063: 15431 - Hypothetical Protein, at 793,722 to 794,198 15431

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
791,699 - 15429 mRNA_7061 0.81 +0.1
791,728 - 15429 mRNA_7061 0.82 -1.3
791,906 - 15429 mRNA_7061 0.88 +0.3
792,025 + -0.3
792,155 - -1.2
792,179 + +0.8
792,331 + +1.2
792,333 - -0.4
792,340 - -0.1
792,344 - -0.8
792,349 + +0.3
792,507 + +3.4
792,630 - -1.2
792,634 + +0.0
792,941 - 15430 mRNA_7062 0.35 +0.2
792,957 + 15430 mRNA_7062 0.36 -0.6
793,128 + 15430 mRNA_7062 0.51 +1.5
793,221 - 15430 mRNA_7062 0.59 -1.3
793,683 + -0.2
793,693 + +0.2
793,714 - -0.8
793,873 + 15431 mRNA_7063 0.32 +2.0
793,966 + 15431 mRNA_7063 0.51 +0.5
794,433 - +0.1
794,435 + -0.3
794,582 + -0.2

Or see this region's nucleotide sequence