Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7070

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15437 and 15438 are separated by 657 nucleotides15438 and 15439 are separated by 370 nucleotides mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806,497 to 812,015 15437 mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812,673 to 814,209 15438 mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814,580 to 815,327 15439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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811,993 + +0.7
812,128 - +0.7
812,131 + +1.0
812,141 - -2.0
812,150 + +0.1
812,192 - +0.7
812,226 - -0.7
812,226 - +0.9
812,248 + +0.6
812,253 + +0.6
812,254 + +0.2
812,258 - +0.6
812,261 + -1.0
812,281 + +0.1
812,286 - -0.3
812,294 - -0.2
812,318 - -0.1
812,323 - -0.4
812,324 + +1.1
812,339 - -1.1
812,377 - +0.4
812,402 + -0.1
812,405 - +1.6
812,406 - +1.3
812,415 + -0.2
812,416 - +0.3
812,416 + -0.8
812,424 - +1.0
812,424 + +2.3
812,426 - -0.4
812,449 - +0.2
812,463 - -0.3
812,466 + +0.0
812,469 + +0.8
812,485 - +0.7
812,489 + -1.9
812,490 + +0.9
812,608 - -0.3
812,612 - +0.6
812,628 + +0.9
812,779 + +0.8
813,158 - 15438 mRNA_7070 0.32 -0.2
813,189 + 15438 mRNA_7070 0.34 -0.0
813,342 - 15438 mRNA_7070 0.44 -0.5
813,430 - 15438 mRNA_7070 0.49 +0.7
813,478 - 15438 mRNA_7070 0.52 +0.9
813,481 - 15438 mRNA_7070 0.53 +0.4
813,491 + 15438 mRNA_7070 0.53 +0.6
813,730 + 15438 mRNA_7070 0.69 -0.2
813,825 + 15438 mRNA_7070 0.75 +1.4
814,067 - +0.6
814,185 + +2.1
814,322 + +0.2
814,333 + +0.7
814,344 - +1.5
814,354 - +1.2
814,357 - -0.3
814,357 + +0.8
814,368 + +0.3
814,407 - +0.2
814,417 - +0.3
814,472 - -0.6
814,478 - -1.0
814,532 + -0.1
814,652 + -0.8
814,665 - 15439 mRNA_7071 0.11 +2.8
814,807 - 15439 mRNA_7071 0.30 +0.4
814,820 - 15439 mRNA_7071 0.32 +0.6

Or see this region's nucleotide sequence