Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7080

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15447 and 15448 are separated by 138 nucleotides15448 and 15449 are separated by 161 nucleotides mRNA_7079: 15447 - Hypothetical Protein, at 833,021 to 833,925 15447 mRNA_7080: 15448 - K12481 RBSN, ZFYVE20 rabenosyn-5, at 834,064 to 836,328 15448 mRNA_7081: 15449 - K00272 DDO D-aspartate oxidase, at 836,490 to 837,896 15449

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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833,111 - +2.2
833,130 + 15447 mRNA_7079 0.12 +0.5
833,142 - 15447 mRNA_7079 0.13 -0.1
833,281 - 15447 mRNA_7079 0.29 -0.3
833,305 + 15447 mRNA_7079 0.31 +1.0
833,422 - 15447 mRNA_7079 0.44 -0.5
833,444 - 15447 mRNA_7079 0.47 -0.5
833,444 + 15447 mRNA_7079 0.47 -0.3
833,733 - 15447 mRNA_7079 0.79 -0.4
833,736 - 15447 mRNA_7079 0.79 -0.7
833,848 + +0.8
833,896 - +2.1
834,011 - -0.1
834,031 - +0.4
835,613 + 15448 mRNA_7080 0.68 -1.5
836,047 - 15448 mRNA_7080 0.88 -1.5
836,218 - -0.2
836,506 + +2.6
836,517 + -1.2
836,542 - +1.0
836,565 - -0.8
836,664 - 15449 mRNA_7081 0.12 +0.2
836,666 - 15449 mRNA_7081 0.13 -0.9
836,813 - 15449 mRNA_7081 0.23 +1.9
836,970 - 15449 mRNA_7081 0.34 +0.3

Or see this region's nucleotide sequence