Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7089

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15457 and 15458 are separated by 198 nucleotides mRNA_7089: 15457 - Hypothetical Protein, at 857,242 to 857,760 15457 mRNA_7090: 15458 - Hypothetical Protein, at 857,959 to 859,367 15458

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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856,309 - -0.9
856,448 - -2.2
856,592 - -0.4
856,606 + +0.2
856,733 + -0.2
856,753 - -0.8
856,786 - +1.6
856,787 - +0.1
856,788 - -0.6
856,802 + -0.5
856,802 - -1.5
856,803 - +0.8
856,804 + +0.1
856,804 + +0.3
856,804 + +1.4
856,806 - +0.7
856,806 + -0.6
856,808 + +0.3
856,811 + -0.3
856,876 - -0.9
856,937 - -0.2
856,960 + +1.0
857,098 + +0.9
857,523 - 15457 mRNA_7089 0.54 +0.5
857,838 + +1.2
857,840 - +0.3
858,154 - 15458 mRNA_7090 0.14 -0.7
858,555 - 15458 mRNA_7090 0.42 +0.7

Or see this region's nucleotide sequence