Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7095

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15462 and 15463 are separated by 26 nucleotides15463 and 15464 are separated by 287 nucleotides mRNA_7094: 15462 - KOG1667 Zn2+-binding protein Melusin/RAR1, contains CHORD domain, at 870,495 to 871,178 15462 mRNA_7095: 15463 - Hypothetical Protein, at 871,205 to 873,737 15463 mRNA_7096: 15464 - K16729 CHORDC1, CHP1 cysteine and histidine-rich domain-containing protein 1, at 874,025 to 875,519 15464

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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870,251 + +0.2
870,260 - +1.6
870,270 + -0.5
870,270 + +0.7
870,271 + +0.9
870,273 - +0.5
870,281 + +0.3
870,399 + -1.4
870,411 - +0.3
870,425 + -1.1
870,542 + +1.1
870,707 + 15462 mRNA_7094 0.31 +1.9
870,866 + 15462 mRNA_7094 0.54 +0.4
871,403 - -0.0
871,857 - 15463 mRNA_7095 0.26 +1.1
873,506 + +0.8
873,625 - -1.0
873,637 + +0.1
873,776 - +1.0
873,776 - -0.8
873,781 - +1.2
873,793 + -1.0
873,793 + -0.3
873,793 + -0.6
873,794 - +0.4
873,795 + +2.0
873,795 - -0.5
873,809 - -0.3
873,935 - -0.4
874,093 - +0.1
874,640 + 15464 mRNA_7096 0.41 +2.5

Or see this region's nucleotide sequence