Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7132

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15499 and 15500 are separated by 222 nucleotides15500 and 15501 are separated by 242 nucleotides mRNA_7131: 15499 - K17800 LETM1, MDM38 LETM1 and EF-hand domain-containing protein 1, mitochondrial, at 949,848 to 952,557 15499 mRNA_7132: 15500 - K16938 SEPT3_9_12 septin 3/9/12, at 952,780 to 954,588 15500 mRNA_7133: 15501 - Hypothetical Protein, at 954,831 to 956,443 15501

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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951,834 - 15499 mRNA_7131 0.73 -0.9
951,941 - 15499 mRNA_7131 0.77 +2.0
951,986 - 15499 mRNA_7131 0.79 -0.6
952,136 + 15499 mRNA_7131 0.84 +0.2
952,262 - 15499 mRNA_7131 0.89 +1.2
952,443 - +2.0
952,575 - -0.2
952,584 - +1.4
952,589 - -0.1
952,604 - -0.3
952,719 - -0.2
952,744 + -0.9
952,811 - +0.1
953,325 + 15500 mRNA_7132 0.30 -1.7
954,252 - 15500 mRNA_7132 0.81 -0.1
954,882 - -0.2
955,075 - 15501 mRNA_7133 0.15 -0.2
955,201 + 15501 mRNA_7133 0.23 +1.0
955,363 - 15501 mRNA_7133 0.33 +0.3
955,478 - 15501 mRNA_7133 0.40 +1.3

Or see this region's nucleotide sequence