Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7156

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15524 and 15525 are separated by 867 nucleotides mRNA_7156: 15524 - K20102 YTHDF YTH domain-containing family protein, at 1,010,794 to 1,011,457 15524 mRNA_7157: 15525 - KOG2936 Uncharacterized conserved protein, at 1,012,325 to 1,013,982 15525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,009,808 - +0.2
1,009,932 + +0.1
1,009,956 - +0.8
1,010,068 - -0.3
1,010,690 + -0.5
1,010,838 + -0.1
1,010,841 - -1.2
1,010,957 + 15524 mRNA_7156 0.25 -1.3
1,011,213 - 15524 mRNA_7156 0.63 -0.6
1,011,216 - 15524 mRNA_7156 0.64 -1.1
1,011,274 + 15524 mRNA_7156 0.72 -0.5
1,011,351 - 15524 mRNA_7156 0.84 +0.5
1,011,422 + -0.6
1,011,424 - -0.0
1,011,520 - +0.5
1,011,552 + -0.6
1,011,561 - -1.5
1,011,640 - +0.4
1,011,654 - +0.7
1,011,687 - -0.8
1,011,725 + +0.1
1,011,812 + +0.4
1,012,084 + +1.5
1,012,090 + -1.2
1,012,257 + +0.4
1,012,261 - +1.8
1,012,434 + +1.1

Or see this region's nucleotide sequence