Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7198

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15566 and 15567 are separated by 158 nucleotides mRNA_7198: 15566 - Hypothetical Protein, at 1,107,641 to 1,108,204 15566 mRNA_7199: 15567 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 1,108,363 to 1,109,217 15567

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,107,355 - -0.2
1,107,374 - +1.1
1,107,848 - 15566 mRNA_7198 0.37 +0.5
1,108,095 - 15566 mRNA_7198 0.80 +0.3
1,108,128 + 15566 mRNA_7198 0.86 +1.7
1,108,140 + 15566 mRNA_7198 0.88 +0.2
1,108,252 - +1.8
1,108,259 - +0.9
1,108,260 - -0.6
1,108,270 - -0.4
1,108,274 - +0.0
1,108,274 - +1.1
1,108,277 + -0.0
1,108,295 + +1.7
1,108,743 + 15567 mRNA_7199 0.44 +0.4
1,108,861 + 15567 mRNA_7199 0.58 +0.3
1,109,003 + 15567 mRNA_7199 0.75 -0.3
1,109,008 - 15567 mRNA_7199 0.75 -0.4

Or see this region's nucleotide sequence