Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7201

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15568 and 15569 are separated by 171 nucleotides mRNA_7200: 15568 - K14816 REI1 pre-60S factor REI1, at 1,109,776 to 1,111,554 15568 mRNA_7201: 15569 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1,111,726 to 1,113,474 15569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,111,028 + 15568 mRNA_7200 0.70 +1.0
1,111,164 - 15568 mRNA_7200 0.78 +1.1
1,111,164 + 15568 mRNA_7200 0.78 -0.2
1,111,173 + 15568 mRNA_7200 0.79 +0.7
1,111,456 - +0.2
1,111,603 - +0.0
1,111,607 + -0.6
1,111,762 + +0.3
1,111,900 - +0.4
1,111,928 - 15569 mRNA_7201 0.12 +1.3
1,112,234 + 15569 mRNA_7201 0.29 -0.1
1,112,600 - 15569 mRNA_7201 0.50 +0.1
1,112,723 - 15569 mRNA_7201 0.57 -0.6
1,113,459 + -0.4
1,113,746 - -0.7
1,113,763 - -0.1
1,113,765 - -0.5
1,113,893 + +1.2
1,113,898 - -0.1
1,113,911 + -0.2
1,114,039 + +1.3
1,114,201 + +0.5
1,114,210 + +2.1

Or see this region's nucleotide sequence