Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7207

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15574 and 15575 are separated by 275 nucleotides15575 and 15576 are separated by 43 nucleotides mRNA_7206: 15574 - BLAST checkpoint 9-1-1 complex, HUS1 component [Moesziomyce..., at 1,121,305 to 1,122,113 15574 mRNA_7207: 15575 - KOG1209 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases, at 1,122,389 to 1,123,916 15575 mRNA_7208: 15576 - K03361 CDC4 F-box and WD-40 domain protein CDC4, at 1,123,960 to 1,127,394 15576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,121,405 + 15574 mRNA_7206 0.12 +0.7
1,121,412 - 15574 mRNA_7206 0.13 -1.1
1,121,543 + 15574 mRNA_7206 0.29 -0.1
1,121,813 - 15574 mRNA_7206 0.63 +0.6
1,122,331 + +1.0
1,122,397 + +0.3
1,122,404 + +2.0
1,122,813 - 15575 mRNA_7207 0.28 +0.4
1,122,830 - 15575 mRNA_7207 0.29 +1.4
1,122,867 - 15575 mRNA_7207 0.31 -0.2
1,123,269 - 15575 mRNA_7207 0.58 -0.1
1,123,270 + 15575 mRNA_7207 0.58 -0.1
1,123,276 - 15575 mRNA_7207 0.58 -1.2
1,123,405 + 15575 mRNA_7207 0.66 +2.0
1,123,576 + 15575 mRNA_7207 0.78 +0.0
1,123,722 + 15575 mRNA_7207 0.87 +1.6
1,123,724 - 15575 mRNA_7207 0.87 -0.9
1,123,736 + 15575 mRNA_7207 0.88 +1.1
1,124,076 + -0.3

Or see this region's nucleotide sequence