Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7219

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15586 and 15587 are separated by 87 nucleotides15587 and 15588 are separated by 95 nucleotides mRNA_7218: 15586 - K20405 NPRL2 nitrogen permease regulator 2-like protein, at 1,156,611 to 1,158,564 15586 mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1,158,652 to 1,160,281 15587 mRNA_7220: 15588 - HMMPfam-zinc-RING finger domain-PF14634,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 1,160,377 to 1,161,832 15588

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,158,088 + 15586 mRNA_7218 0.76 +2.0
1,158,276 + 15586 mRNA_7218 0.85 -0.3
1,158,369 - -0.2
1,159,292 - 15587 mRNA_7219 0.39 +2.5
1,159,726 + 15587 mRNA_7219 0.66 +2.9
1,160,155 - -0.9
1,160,163 - +0.6
1,160,184 - +1.9
1,160,299 - +0.4
1,160,306 + -0.3
1,160,313 + +1.0
1,160,600 - 15588 mRNA_7220 0.15 +0.0
1,160,762 - 15588 mRNA_7220 0.26 -0.0
1,161,180 - 15588 mRNA_7220 0.55 +1.1

Or see this region's nucleotide sequence