Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7222

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15589 and 15590 are separated by 349 nucleotides15590 and 15591 are separated by 273 nucleotides mRNA_7221: 15589 - K02133 ATPeF1B, ATP5B, ATP2 F-type H+-transporting ATPase subunit beta, at 1,163,041 to 1,165,362 15589 mRNA_7222: 15590 - KOG1572 Predicted protein tyrosine phosphatase, at 1,165,712 to 1,166,653 15590 mRNA_7223: 15591 - K19983 EXOC1, SEC3 exocyst complex component 1, at 1,166,927 to 1,171,458 15591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,165,385 - +0.2
1,165,522 - -0.6
1,165,572 - -0.1
1,165,692 + +1.0
1,165,708 - -0.1
1,165,825 - 15590 mRNA_7222 0.12 +0.4
1,165,860 + 15590 mRNA_7222 0.16 +2.3
1,166,001 + 15590 mRNA_7222 0.31 +0.0
1,166,087 - 15590 mRNA_7222 0.40 -0.7
1,166,259 - 15590 mRNA_7222 0.58 +2.5
1,166,579 - -0.0
1,167,200 - +0.6
1,167,321 + +1.2
1,167,626 - 15591 mRNA_7223 0.15 -0.4

Or see this region's nucleotide sequence