Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7234

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15601 and 15602 are separated by 171 nucleotides15602 and 15603 are separated by 638 nucleotides mRNA_7233: 15601 - Hypothetical Protein, at 1,187,693 to 1,188,676 15601 mRNA_7234: 15602 - HMMPfam-Mitochondrial ribosomal protein subunit-PF11709, at 1,188,848 to 1,190,629 15602 mRNA_7235: 15603 - Hypothetical Protein, at 1,191,268 to 1,192,067 15603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,187,993 - 15601 mRNA_7233 0.30 +2.2
1,188,424 - 15601 mRNA_7233 0.74 -0.3
1,188,432 + 15601 mRNA_7233 0.75 +0.9
1,188,581 - -0.1
1,188,585 - +2.4
1,188,585 - -1.1
1,188,600 + -0.7
1,188,605 + -1.3
1,188,635 + -0.4
1,188,689 + -0.3
1,188,725 - +0.1
1,188,749 - +1.1
1,188,754 - +1.2
1,190,636 - +0.7
1,190,751 + +1.2
1,190,787 + -0.1
1,190,907 - -0.1
1,190,909 + +0.2
1,190,920 - +1.3
1,190,997 - +0.1
1,191,001 - -0.1
1,191,022 + +0.9
1,191,040 - -0.5
1,191,042 + -0.2
1,191,062 - +1.4
1,191,067 - -0.9
1,191,068 - +0.3
1,191,088 + -0.1
1,191,089 - +0.3
1,191,137 + +0.7
1,191,207 - -0.2
1,191,226 - +0.5
1,191,229 + -0.4
1,191,248 + -0.2
1,191,253 - -1.7
1,191,257 + +0.6
1,191,281 - +1.1
1,191,361 + 15603 mRNA_7235 0.12 -0.6
1,191,393 + 15603 mRNA_7235 0.16 +0.1
1,191,414 - 15603 mRNA_7235 0.18 +0.7
1,191,531 - 15603 mRNA_7235 0.33 +0.2
1,191,545 + 15603 mRNA_7235 0.35 +1.5

Or see this region's nucleotide sequence