Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7264

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15631 and 15632 are separated by 222 nucleotides15632 and 15633 are separated by 609 nucleotides mRNA_7263: 15631 - K00615 E2.2.1.1, tktA, tktB transketolase, at 1,251,489 to 1,254,335 15631 mRNA_7264: 15632 - Hypothetical Protein, at 1,254,558 to 1,258,564 15632 mRNA_7265: 15633 - Hypothetical Protein, at 1,259,174 to 1,259,392 15633

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,254,469 + +0.6
1,254,487 - +0.8
1,254,609 + -0.5
1,254,633 - +0.2
1,254,640 + -1.1
1,254,695 - -1.5
1,254,784 + +1.2
1,254,951 - -0.2
1,254,957 + -0.3
1,255,007 + 15632 mRNA_7264 0.11 -0.0
1,255,030 + 15632 mRNA_7264 0.12 +0.1
1,255,103 + 15632 mRNA_7264 0.14 -0.6
1,255,139 - 15632 mRNA_7264 0.14 +1.0
1,255,524 - 15632 mRNA_7264 0.24 +0.4
1,255,637 + 15632 mRNA_7264 0.27 +0.7
1,255,669 - 15632 mRNA_7264 0.28 -0.9
1,255,769 + 15632 mRNA_7264 0.30 -1.2
1,255,803 + 15632 mRNA_7264 0.31 -0.3
1,255,814 - 15632 mRNA_7264 0.31 -0.2
1,255,884 + 15632 mRNA_7264 0.33 -0.4
1,255,894 + 15632 mRNA_7264 0.33 +0.1
1,255,944 + 15632 mRNA_7264 0.35 +0.5
1,256,232 - 15632 mRNA_7264 0.42 +0.1
1,256,876 - 15632 mRNA_7264 0.58 +0.6
1,256,979 + 15632 mRNA_7264 0.60 +0.2
1,257,067 - 15632 mRNA_7264 0.63 +0.0
1,257,123 + 15632 mRNA_7264 0.64 +0.6
1,257,412 - 15632 mRNA_7264 0.71 +0.1
1,257,436 - 15632 mRNA_7264 0.72 +0.7
1,257,547 - 15632 mRNA_7264 0.75 -1.0
1,257,558 + 15632 mRNA_7264 0.75 +2.2
1,257,560 - 15632 mRNA_7264 0.75 +0.2
1,257,583 + 15632 mRNA_7264 0.75 +2.0
1,257,585 + 15632 mRNA_7264 0.76 -0.8
1,257,740 - 15632 mRNA_7264 0.79 +3.6
1,257,880 - 15632 mRNA_7264 0.83 +0.1
1,258,180 + +0.9
1,258,199 - -2.0
1,258,333 - +0.2
1,258,333 - -0.1
1,258,466 + +0.7
1,258,600 - +0.1
1,258,617 + -0.8
1,258,629 + +1.2
1,258,921 - +0.0
1,259,489 - +1.0
1,259,490 - +2.8
1,259,492 - +0.9
1,259,506 + +2.0
1,259,523 - +0.6

Or see this region's nucleotide sequence