Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7289

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15656 and 15657 are separated by 464 nucleotides15657 and 15658 are separated by 161 nucleotides mRNA_7288: 15656 - Hypothetical Protein, at 1,304,833 to 1,305,984 15656 mRNA_7289: 15657 - K12877 MAGOH protein mago nashi, at 1,306,449 to 1,307,582 15657 mRNA_7290: 15658 - HMMPfam-TEA/ATTS domain family-PF01285,ProSiteProfiles-TEA domain profile.-PS51088,SMART-TEA domain-SM00426, at 1,307,744 to 1,309,291 15658

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,305,593 + 15656 mRNA_7288 0.66 +0.8
1,305,685 + 15656 mRNA_7288 0.74 +1.1
1,305,761 - 15656 mRNA_7288 0.81 +1.2
1,305,813 + 15656 mRNA_7288 0.85 +1.1
1,305,813 + 15656 mRNA_7288 0.85 -0.2
1,306,097 + -0.4
1,307,699 + +0.2
1,307,855 - +1.3
1,307,985 + 15658 mRNA_7290 0.16 -0.4
1,308,265 - 15658 mRNA_7290 0.34 +0.1
1,308,322 - 15658 mRNA_7290 0.37 +0.5
1,308,482 - 15658 mRNA_7290 0.48 -1.2

Or see this region's nucleotide sequence