Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7301

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15668 and 15669 are separated by 358 nucleotides15669 and 15670 are separated by 489 nucleotides mRNA_7300: 15668 - SUPERFAMILY--SSF47823, at 1,335,856 to 1,345,801 15668 mRNA_7301: 15669 - Hypothetical Protein, at 1,346,160 to 1,348,267 15669 mRNA_7302: 15670 - Hypothetical Protein, at 1,348,757 to 1,350,807 15670

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,345,172 - +0.0
1,345,364 - +0.5
1,345,605 - +2.4
1,346,064 + +0.3
1,346,359 - -1.7
1,346,364 + +0.9
1,346,542 - 15669 mRNA_7301 0.18 +1.1
1,346,547 - 15669 mRNA_7301 0.18 -1.0
1,346,548 + 15669 mRNA_7301 0.18 +2.6
1,346,548 + 15669 mRNA_7301 0.18 +1.6
1,346,548 - 15669 mRNA_7301 0.18 -0.3
1,346,834 - 15669 mRNA_7301 0.32 -1.4
1,346,955 - 15669 mRNA_7301 0.38 -0.8
1,346,960 + 15669 mRNA_7301 0.38 -1.9
1,346,963 - 15669 mRNA_7301 0.38 -1.2
1,347,039 - 15669 mRNA_7301 0.42 +2.0
1,347,123 + 15669 mRNA_7301 0.46 +1.0
1,347,361 - 15669 mRNA_7301 0.57 +1.8
1,347,584 + 15669 mRNA_7301 0.68 +1.4
1,347,817 + 15669 mRNA_7301 0.79 +0.6
1,347,854 + 15669 mRNA_7301 0.80 +0.4
1,347,855 + 15669 mRNA_7301 0.80 -0.4
1,348,083 + +0.5
1,348,139 + +1.6
1,348,158 + +0.1
1,348,230 - +0.1
1,348,234 + +1.0
1,348,241 + +0.1
1,348,385 - +0.3
1,348,404 - +2.6
1,348,544 + +0.5
1,348,592 + +2.0
1,348,690 + -1.0
1,348,752 + +1.5
1,348,792 + +1.4
1,348,831 - +0.2
1,348,833 + +0.5
1,348,837 - +1.4
1,348,848 - +0.4
1,348,850 + +0.0
1,348,871 - -0.1
1,348,921 + -0.4
1,348,962 - 15670 mRNA_7302 0.10 -0.2
1,349,026 + 15670 mRNA_7302 0.13 +0.5
1,349,099 + 15670 mRNA_7302 0.17 -0.1
1,349,116 + 15670 mRNA_7302 0.18 -1.0
1,349,134 + 15670 mRNA_7302 0.18 -0.1
1,349,263 + 15670 mRNA_7302 0.25 -0.1
1,349,264 + 15670 mRNA_7302 0.25 +0.7
1,349,267 - 15670 mRNA_7302 0.25 +0.1

Or see this region's nucleotide sequence