Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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14 + -1.1
14 + +2.7
14 + +1.1
14 + +0.1
22 + -0.9
29 + +0.7
35 + +0.3
45 + +0.9
66 + +0.1
68 + -1.2
71 - +0.2
105 + -0.2
120 - +0.4
120 + -0.9
121 - -0.8
122 - -1.6
126 + +0.1
126 + -0.2
131 - -1.0
135 - +0.8
135 + +1.4
135 + -0.3
135 + +0.5
135 - -0.2
142 - +1.2
148 + -0.2
153 + +1.0
159 - +0.3
159 - -0.2
161 + -0.3
168 - +0.2
195 + +1.6
233 + -0.5
263 + 15688 mRNA_7320 0.11 +1.6
267 - 15688 mRNA_7320 0.11 -1.4
301 - 15688 mRNA_7320 0.14 +1.5
310 - 15688 mRNA_7320 0.14 +0.6
313 + 15688 mRNA_7320 0.15 +2.3
313 + 15688 mRNA_7320 0.15 +0.8
319 + 15688 mRNA_7320 0.15 -0.6
322 - 15688 mRNA_7320 0.15 +0.4
340 - 15688 mRNA_7320 0.16 +0.1
345 + 15688 mRNA_7320 0.17 -0.0
357 + 15688 mRNA_7320 0.18 +1.4
359 + 15688 mRNA_7320 0.18 +0.7
365 - 15688 mRNA_7320 0.18 +1.4
401 - 15688 mRNA_7320 0.21 -0.0
401 - 15688 mRNA_7320 0.21 +0.1
401 + 15688 mRNA_7320 0.21 -0.4
405 + 15688 mRNA_7320 0.21 -0.4
415 + 15688 mRNA_7320 0.22 -0.2
428 - 15688 mRNA_7320 0.23 -3.0
461 - 15688 mRNA_7320 0.25 -0.6
462 + 15688 mRNA_7320 0.25 +0.5
466 - 15688 mRNA_7320 0.25 +0.6
482 + 15688 mRNA_7320 0.26 +1.6
488 - 15688 mRNA_7320 0.27 +1.5
573 - 15688 mRNA_7320 0.33 +0.1
594 - 15688 mRNA_7320 0.34 +0.8
595 + 15688 mRNA_7320 0.34 +0.1
595 + 15688 mRNA_7320 0.34 -0.5
625 - 15688 mRNA_7320 0.36 -0.6
644 + 15688 mRNA_7320 0.38 -0.2
644 + 15688 mRNA_7320 0.38 -0.9
648 + 15688 mRNA_7320 0.38 +1.2
654 - 15688 mRNA_7320 0.38 -0.0
654 + 15688 mRNA_7320 0.38 +0.7
713 + 15688 mRNA_7320 0.43 -0.3
753 - 15688 mRNA_7320 0.45 +2.1
756 - 15688 mRNA_7320 0.46 -0.3
763 + 15688 mRNA_7320 0.46 -0.6
765 + 15688 mRNA_7320 0.46 -0.0
778 + 15688 mRNA_7320 0.47 +2.2
811 - 15688 mRNA_7320 0.49 +0.7
921 + 15688 mRNA_7320 0.57 +1.6
945 + 15688 mRNA_7320 0.59 -0.1
1,059 + 15688 mRNA_7320 0.67 +0.9
1,167 + 15688 mRNA_7320 0.74 -0.3
1,174 + 15688 mRNA_7320 0.75 -0.2
1,182 - 15688 mRNA_7320 0.75 -1.1
1,196 + 15688 mRNA_7320 0.76 +0.9
1,218 + 15688 mRNA_7320 0.78 +1.2
1,258 + 15688 mRNA_7320 0.81 +2.1
1,326 - 15688 mRNA_7320 0.85 -0.3
1,360 + 15688 mRNA_7320 0.88 +1.1
1,366 + 15688 mRNA_7320 0.88 -0.4
1,497 - -0.7
1,518 + +0.5
1,582 + +1.6
1,666 - +0.7
1,675 + +1.2
1,789 - +0.2
1,907 + +2.0
1,929 + -0.9
1,948 + +3.7
2,105 - +1.4
2,297 - 15689 mRNA_7321 0.19 -0.2
2,508 - 15689 mRNA_7321 0.31 +0.8
2,521 + 15689 mRNA_7321 0.32 +0.1
2,526 + 15689 mRNA_7321 0.32 -0.9
2,529 - 15689 mRNA_7321 0.32 -0.0
2,529 - 15689 mRNA_7321 0.32 -0.8

Or see this region's nucleotide sequence