Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7328

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15695 and 15696 are separated by 297 nucleotides mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15,080 to 16,504 15695 mRNA_7328: 15696 - KOG1339 Aspartyl protease, at 16,802 to 18,584 15696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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16,260 - 15695 mRNA_7327 0.83 -0.3
16,270 - 15695 mRNA_7327 0.84 -0.4
16,314 + 15695 mRNA_7327 0.87 +2.4
16,588 + +0.7
16,598 + +1.4
16,769 - -0.4
16,797 + +0.7
17,098 - 15696 mRNA_7328 0.17 -0.0
17,165 + 15696 mRNA_7328 0.20 -0.1
17,318 + 15696 mRNA_7328 0.29 +2.4
17,592 + 15696 mRNA_7328 0.44 +1.8
17,597 - 15696 mRNA_7328 0.45 +1.1
17,708 + 15696 mRNA_7328 0.51 -0.2
17,731 - 15696 mRNA_7328 0.52 -0.9
17,895 - 15696 mRNA_7328 0.61 -0.4
18,001 + 15696 mRNA_7328 0.67 +1.3
18,174 - 15696 mRNA_7328 0.77 -0.2
18,187 + 15696 mRNA_7328 0.78 +1.2
18,193 + 15696 mRNA_7328 0.78 +0.1
18,195 + 15696 mRNA_7328 0.78 +0.5
18,290 - 15696 mRNA_7328 0.83 +0.1
18,345 + 15696 mRNA_7328 0.87 -0.8
18,433 - +0.7
18,488 + +1.9
18,600 - +0.6
18,618 - +2.5
18,813 + -0.3
19,048 - -0.4
19,062 - -0.2
19,122 + +0.5
19,182 - +0.6
19,219 - +0.2
19,227 + +0.2
19,227 + +0.2
19,228 - -0.1
19,336 - +0.3
19,338 - +0.5
19,343 + +0.1
19,356 - +0.7
19,369 - +0.8
19,503 + +0.0

Or see this region's nucleotide sequence