Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7329

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15697 and 15698 are separated by 516 nucleotides mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19,651 to 22,039 15697 mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22,556 to 24,304 15698

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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18,813 + -0.3
19,048 - -0.4
19,062 - -0.2
19,122 + +0.5
19,182 - +0.6
19,219 - +0.2
19,227 + +0.2
19,227 + +0.2
19,228 - -0.1
19,336 - +0.3
19,338 - +0.5
19,343 + +0.1
19,356 - +0.7
19,369 - +0.8
19,503 + +0.0
19,843 - -1.2
19,890 - 15697 mRNA_7329 0.10 -0.1
19,953 + 15697 mRNA_7329 0.13 -0.2
19,962 + 15697 mRNA_7329 0.13 -0.1
20,120 + 15697 mRNA_7329 0.20 -0.9
20,214 - 15697 mRNA_7329 0.24 +1.2
20,226 + 15697 mRNA_7329 0.24 +1.2
20,226 + 15697 mRNA_7329 0.24 +0.2
20,229 - 15697 mRNA_7329 0.24 +0.7
20,232 - 15697 mRNA_7329 0.24 +0.1
20,701 + 15697 mRNA_7329 0.44 +1.5
20,830 - 15697 mRNA_7329 0.49 +0.0
21,159 - 15697 mRNA_7329 0.63 +1.2
21,279 - 15697 mRNA_7329 0.68 -0.2
21,687 + 15697 mRNA_7329 0.85 -0.5
21,838 - +0.8
21,990 + +1.1
21,996 - -1.2
22,283 - +1.6
22,425 - -0.7
22,446 - +0.5

Or see this region's nucleotide sequence