Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7341

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15708 and 15709 are separated by 93 nucleotides15709 and 15710 are separated by 463 nucleotides mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39,779 to 41,768 15708 mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699 15709 mRNA_7342: 15710 - Hypothetical Protein, at 43,163 to 45,525 15710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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41,042 - 15708 mRNA_7340 0.63 -0.6
41,059 - 15708 mRNA_7340 0.64 +2.2
41,340 - 15708 mRNA_7340 0.78 +0.3
41,525 + 15708 mRNA_7340 0.88 -0.3
41,738 + +0.1
41,803 + +2.7
41,934 - +0.0
41,960 + 15709 mRNA_7341 0.12 +0.5
42,104 + 15709 mRNA_7341 0.29 -0.4
42,238 - 15709 mRNA_7341 0.45 +2.6
42,344 + 15709 mRNA_7341 0.58 +0.4
42,392 - 15709 mRNA_7341 0.63 -0.4
42,697 - +0.1
42,701 + +0.6
42,823 - +0.1
42,973 + -0.2
43,061 + -0.3
43,078 - -0.6
43,399 + +1.0

Or see this region's nucleotide sequence