Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7346

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15714 and 15715 are separated by 282 nucleotides mRNA_7346: 15714 - Hypothetical Protein, at 58,216 to 59,419 15714 mRNA_7347: 15715 - K09495 CCT3, TRIC5 T-complex protein 1 subunit gamma, at 59,702 to 62,348 15715

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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57,219 + -0.8
57,243 + +1.9
57,254 + +0.7
57,260 - +1.8
57,266 + +0.5
57,267 - +1.2
57,268 + +1.1
57,272 - +1.4
57,291 + +2.6
57,347 + +1.0
57,534 + -0.9
57,535 + +0.3
57,687 - -0.5
57,690 - +1.5
57,766 + -0.6
57,861 + +0.3
57,870 + +0.3
58,291 + +0.3
58,771 + 15714 mRNA_7346 0.46 +0.1
59,183 - 15714 mRNA_7346 0.80 -0.7
59,308 - -0.9
59,483 - -0.7
59,516 + +0.3
59,635 - +2.1
59,642 + +0.4
59,645 + +0.4
59,649 + +0.3

Or see this region's nucleotide sequence