Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7360

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15728 and 15729 are separated by 430 nucleotides mRNA_7360: 15728 - Hypothetical Protein, at 90,512 to 91,159 15728 mRNA_7361: 15729 - K14685 SLC40A1, FPN1 solute carrier family 40 (iron-regulated transporter), member 1, at 91,590 to 93,600 15729

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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91,027 - 15728 mRNA_7360 0.79 -0.7
91,035 - 15728 mRNA_7360 0.81 +1.2
91,215 + +0.5
91,478 + +0.9
91,480 - -1.1
91,505 - +2.1
91,635 - -0.6
91,646 - -0.0
91,647 - -0.9
91,648 + +0.9
91,779 - +0.9
91,781 - +0.1
91,838 - 15729 mRNA_7361 0.12 -0.6
91,954 - 15729 mRNA_7361 0.18 +2.5
92,090 - 15729 mRNA_7361 0.25 +1.0

Or see this region's nucleotide sequence