Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7400

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15767 and 15768 are separated by 163 nucleotides15768 and 15769 are separated by 478 nucleotides mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186,172 to 187,240 15767 mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187,404 to 189,530 15768 mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190,009 to 193,201 15769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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187,662 - 15768 mRNA_7400 0.12 -0.4
188,255 - 15768 mRNA_7400 0.40 -0.4
188,266 + 15768 mRNA_7400 0.41 +0.4
188,651 + 15768 mRNA_7400 0.59 -0.4
189,412 - -0.5
189,450 + +1.7
189,615 - +0.4
189,754 + +2.7
189,857 + +0.2
189,860 - +0.5
189,860 - -0.6
189,862 + +0.2
189,864 + -0.0
189,865 - +1.4
189,866 - -0.2
189,871 - -0.0
189,872 + -1.0
189,876 - +0.1
189,877 - -0.5
189,882 + +0.6
189,883 + +0.1
189,883 + +0.5
190,002 - +0.2
190,028 - +0.8
190,032 + +0.4
190,190 + +0.0
190,309 - +0.9
190,323 + +1.0

Or see this region's nucleotide sequence