Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7413

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15780 and 15781 are separated by 120 nucleotides15781 and 15782 are separated by 258 nucleotides mRNA_7412: 15780 - K03596 lepA GTP-binding protein LepA, at 218,132 to 221,123 15780 mRNA_7413: 15781 - K17550 PPP1R7, SDS22 protein phosphatase 1 regulatory subunit 7, at 221,244 to 223,051 15781 mRNA_7414: 15782 - Hypothetical Protein, at 223,310 to 224,480 15782

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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220,593 - 15780 mRNA_7412 0.82 +0.3
220,898 - +0.4
221,163 + +0.9
221,166 - +0.8
221,172 - -0.7
223,040 - -0.2
223,081 + +0.6
223,453 - 15782 mRNA_7414 0.12 +0.2
223,619 - 15782 mRNA_7414 0.26 +1.8
223,785 - 15782 mRNA_7414 0.41 -0.3

Or see this region's nucleotide sequence