Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7492

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15860 and 15861 are separated by 271 nucleotides mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413,900 to 421,307 15860 mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421,579 to 423,387 15861

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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412,916 - -0.1
412,937 + -0.5
413,041 - -0.2
413,207 + +2.0
413,319 - -0.4
413,353 - +2.2
413,370 + +0.4
413,651 - -0.7
413,785 - -1.3
413,901 + +0.1
413,909 + +1.9
413,978 + +1.2
414,526 + +1.1
414,813 - 15860 mRNA_7492 0.12 -1.0
415,379 - 15860 mRNA_7492 0.20 +1.0
415,389 - 15860 mRNA_7492 0.20 +1.8
415,726 + 15860 mRNA_7492 0.25 -0.2
416,125 + 15860 mRNA_7492 0.30 +0.1
416,394 - 15860 mRNA_7492 0.34 -1.7
416,687 + 15860 mRNA_7492 0.38 +0.4
416,868 + 15860 mRNA_7492 0.40 +1.6
416,887 - 15860 mRNA_7492 0.40 +2.1
417,729 - 15860 mRNA_7492 0.52 -0.2
417,873 - 15860 mRNA_7492 0.54 -0.5
418,404 + 15860 mRNA_7492 0.61 +0.5
419,005 + 15860 mRNA_7492 0.69 -1.0
419,186 + 15860 mRNA_7492 0.71 +1.4
419,457 + 15860 mRNA_7492 0.75 -0.2
419,469 + 15860 mRNA_7492 0.75 -0.7
419,484 + 15860 mRNA_7492 0.75 -1.0
419,958 - 15860 mRNA_7492 0.82 -0.1
420,014 - 15860 mRNA_7492 0.83 -0.1
420,053 - 15860 mRNA_7492 0.83 -0.6
420,093 - 15860 mRNA_7492 0.84 -0.4
420,648 - +1.6
420,869 + -1.1
420,939 - -0.8
420,957 - -1.4
421,093 - +2.0
421,120 - +1.6
421,253 + +0.6
421,408 - -1.7
421,665 - +0.0
421,666 - +0.6
421,677 - -0.6
421,678 - +1.2
421,681 - -2.6
421,689 - +1.4
421,690 + +0.1
421,692 - -0.7
421,694 + +0.3
421,697 + +1.1
421,842 + 15861 mRNA_7493 0.15 -0.1
421,969 - 15861 mRNA_7493 0.22 +0.4
421,970 - 15861 mRNA_7493 0.22 -0.0
421,976 + 15861 mRNA_7493 0.22 +1.6
421,988 - 15861 mRNA_7493 0.23 -1.5
422,126 + 15861 mRNA_7493 0.30 +1.1
422,272 + 15861 mRNA_7493 0.38 +1.0
422,307 + 15861 mRNA_7493 0.40 +0.1

Or see this region's nucleotide sequence