Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7513

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15880 and 15881 are separated by 265 nucleotides15881 and 15882 are separated by 203 nucleotides mRNA_7512: 15880 - HMMPfam-ATP synthase E chain-PF05680, at 469,028 to 469,780 15880 mRNA_7513: 15881 - KOG3267 Uncharacterized conserved protein, at 470,046 to 470,823 15881 mRNA_7514: 15882 - K11757 PBRM1, PB1 protein polybromo-1, at 471,027 to 473,637 15882

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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469,695 + 15880 mRNA_7512 0.89 -2.0
469,712 + +1.7
469,828 - +1.8
469,852 + +0.9
469,868 + -0.3
470,114 + -0.2
470,142 + 15881 mRNA_7513 0.12 +2.1
470,150 - 15881 mRNA_7513 0.13 -0.4
470,170 - 15881 mRNA_7513 0.16 -0.2
470,319 + 15881 mRNA_7513 0.35 +1.0
470,457 + 15881 mRNA_7513 0.53 +2.4
470,717 - 15881 mRNA_7513 0.86 -0.7
471,032 + -0.4
471,598 + 15882 mRNA_7514 0.22 -0.2
471,619 - 15882 mRNA_7514 0.23 +0.3
471,752 - 15882 mRNA_7514 0.28 +2.2

Or see this region's nucleotide sequence