Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7520

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15887 and 15888 are separated by 657 nucleotides15888 and 15889 are separated by 115 nucleotides mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481,240 to 482,191 15887 mRNA_7520: 15888 - K18725 POM152 nucleoporin POM152, at 482,849 to 487,263 15888 mRNA_7521: 15889 - K18624 MAEA, EMP macrophage erythroblast attacher, at 487,379 to 489,204 15889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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481,971 - 15887 mRNA_7519 0.77 +0.4
482,206 - -0.4
482,230 - -0.4
482,330 - -2.7
482,350 - -0.2
482,364 - +1.2
482,398 - +0.5
482,423 + +0.4
482,429 - -0.2
482,467 - -0.1
482,481 + +1.2
482,494 - -0.5
482,495 - +0.6
482,504 + +0.3
482,508 + -2.4
482,510 + -0.9
482,517 + +0.2
482,522 + -0.4
482,544 + -0.2
482,561 - -0.9
482,622 - +1.0
482,657 + +0.7
482,664 - +0.3
482,666 - +0.5
482,703 - +0.3
482,710 - +0.5
482,722 - +0.0
482,731 + -0.9
482,734 - +1.0
482,736 - +0.9
482,750 + +0.4
482,847 + -0.4
482,849 - +1.8
482,852 + -0.9
482,863 + +0.0
482,873 + +0.8
482,884 - +0.4
482,891 + +0.2
482,907 + +1.2
482,917 + -0.3
483,066 + -0.3
483,165 + +0.8
483,169 + +0.2
483,231 + +1.0
483,323 - 15888 mRNA_7520 0.11 +0.1
483,439 - 15888 mRNA_7520 0.13 +1.0
483,445 - 15888 mRNA_7520 0.13 +0.3
483,452 - 15888 mRNA_7520 0.14 -0.5
483,771 + 15888 mRNA_7520 0.21 -0.3
484,041 - 15888 mRNA_7520 0.27 +0.8
484,044 + 15888 mRNA_7520 0.27 -0.1
484,317 + 15888 mRNA_7520 0.33 +1.2
484,802 - 15888 mRNA_7520 0.44 -0.0
485,368 + 15888 mRNA_7520 0.57 +0.3
485,388 + 15888 mRNA_7520 0.58 +0.7
485,729 + 15888 mRNA_7520 0.65 +2.3
485,995 - 15888 mRNA_7520 0.71 +1.3
486,031 - 15888 mRNA_7520 0.72 +1.7
486,038 + 15888 mRNA_7520 0.72 +1.5
486,886 - +0.1
486,895 - +1.0
487,006 + +0.2
487,029 - +0.8
487,043 + -0.2
487,175 + +0.5
487,176 - +0.3
487,336 - -0.1
487,437 - -0.7
487,474 - +0.1
487,476 + -0.3
487,628 + 15889 mRNA_7521 0.14 -0.3
487,642 - 15889 mRNA_7521 0.14 -0.2
487,753 + 15889 mRNA_7521 0.20 +2.1
487,758 - 15889 mRNA_7521 0.21 +0.2
487,774 - 15889 mRNA_7521 0.22 +1.9
487,779 + 15889 mRNA_7521 0.22 +0.0

Or see this region's nucleotide sequence