Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7536

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15903 and 15904 are separated by 231 nucleotides15904 and 15905 are separated by 126 nucleotides mRNA_7535: 15903 - HMMPfam-Complex1_LYR-like-PF13232, at 512,882 to 513,517 15903 mRNA_7536: 15904 - KOG2216 Conserved coiled/coiled coil protein, at 513,749 to 514,681 15904 mRNA_7537: 15905 - K13524 ABAT 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase, at 514,808 to 517,082 15905

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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513,583 - +0.5
513,597 + +0.9
513,599 - -0.3
513,728 + +1.1
513,869 - 15904 mRNA_7536 0.13 +0.4
513,873 + 15904 mRNA_7536 0.13 -0.3
513,887 - 15904 mRNA_7536 0.15 -0.3
514,016 + 15904 mRNA_7536 0.29 +0.2
514,688 + -1.2
514,730 + -1.0
514,746 + -0.3
514,763 - -2.2
515,048 + 15905 mRNA_7537 0.11 +0.7
515,193 + 15905 mRNA_7537 0.17 +1.6
515,203 + 15905 mRNA_7537 0.17 +0.1
515,207 - 15905 mRNA_7537 0.18 -0.2
515,213 - 15905 mRNA_7537 0.18 -0.9
515,215 + 15905 mRNA_7537 0.18 +2.1
515,259 + 15905 mRNA_7537 0.20 +1.2

Or see this region's nucleotide sequence