Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7578

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15944 and 15945 are separated by 85 nucleotides15945 and 15946 are separated by 90 nucleotides15946 and 15947 are separated by 381 nucleotides mRNA_7576: 15944 - K02838 frr, MRRF, RRF ribosome recycling factor, at 604,811 to 605,906 15944 mRNA_7577: 15945 - Hypothetical Protein, at 605,992 to 606,645 15945 mRNA_7578: 15946 - KOG2512 Beta-tubulin folding cofactor C, at 606,736 to 607,935 15946 mRNA_7579: 15947 - K03952 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8, at 608,317 to 609,498 15947

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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605,935 - +0.7
605,955 - +1.0
605,963 + +1.0
605,965 - +0.4
605,973 - +2.3
606,237 - 15945 mRNA_7577 0.37 -0.6
606,384 - 15945 mRNA_7577 0.60 +0.7
606,388 + 15945 mRNA_7577 0.61 +0.6
606,403 + 15945 mRNA_7577 0.63 +1.9
606,815 - +1.5
607,387 - 15946 mRNA_7578 0.54 -1.0
607,951 - -0.8
607,981 + -0.3
608,130 + -0.5
608,133 - -0.5
608,276 + -1.0
608,288 - +0.3

Or see this region's nucleotide sequence