Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7626

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15993 and 15994 are separated by 469 nucleotides15994 and 15995 are separated by 172 nucleotides mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708,151 to 709,093 15993 mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709,563 to 711,029 15994 mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775 15995

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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708,581 + 15993 mRNA_7625 0.46 +0.3
708,689 + 15993 mRNA_7625 0.57 +0.2
708,757 - 15993 mRNA_7625 0.64 +1.1
708,849 - 15993 mRNA_7625 0.74 +0.8
708,853 - 15993 mRNA_7625 0.74 +0.1
708,869 - 15993 mRNA_7625 0.76 +2.4
708,883 - 15993 mRNA_7625 0.78 +1.0
708,895 + 15993 mRNA_7625 0.79 +2.4
708,898 + 15993 mRNA_7625 0.79 +0.2
709,030 - +1.1
709,140 - -0.1
709,146 - -0.2
709,153 - -0.5
709,167 - -1.4
709,167 + +0.2
709,178 - +1.0
709,191 + +0.9
709,203 + +1.8
709,204 + +1.3
709,206 + +1.2
709,223 + +1.8
709,232 - +0.9
709,235 - +0.0
709,235 - +2.0
709,236 + +0.9
709,238 + +1.5
709,238 + -1.3
709,240 + +0.7
709,242 + +1.2
709,249 - +0.4
709,257 - -0.0
709,319 - -0.1
709,319 + +0.5
709,325 - -0.4
709,343 + +0.7
709,473 + -0.3
709,489 + -0.0
709,491 - +0.3
709,492 - +0.1
709,492 - +1.5
709,498 + +2.5
709,801 - 15994 mRNA_7626 0.16 -0.3
710,103 - 15994 mRNA_7626 0.37 +0.6
710,380 + 15994 mRNA_7626 0.56 +1.6
710,380 - 15994 mRNA_7626 0.56 +0.3
710,387 - 15994 mRNA_7626 0.56 +2.5
710,505 - 15994 mRNA_7626 0.64 +0.5
710,689 - 15994 mRNA_7626 0.77 +0.5
710,913 - +0.6
710,969 + +1.2
710,987 - -0.7
711,001 + +0.8
711,010 + +2.4
711,075 - -2.1
711,084 - +1.1
711,084 - -0.2
711,087 - -0.4
711,098 + +1.6
711,144 - +0.2
711,193 - -1.1
711,242 - -0.4
711,303 + -0.5
711,424 + 15995 mRNA_7627 0.14 -0.1
711,429 + 15995 mRNA_7627 0.14 -0.4
711,664 - 15995 mRNA_7627 0.29 -0.4

Or see this region's nucleotide sequence