Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7634

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16001 and 16002 are separated by 460 nucleotides16002 and 16003 are separated by 451 nucleotides mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730,629 to 733,694 16001 mRNA_7634: 16002 - HMMPfam-Protein of unknown function (DUF1264)-PF06884, at 734,155 to 735,362 16002 mRNA_7635: 16003 - K02865 RP-L10Ae, RPL10A large subunit ribosomal protein L10Ae, at 735,814 to 737,148 16003

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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733,300 - 16001 mRNA_7633 0.87 +1.9
733,322 - 16001 mRNA_7633 0.88 -0.5
733,669 + +0.6
733,864 - -0.3
733,949 + +0.1
733,951 + +1.1
734,087 + -0.2
734,091 + -0.1
734,105 - +0.9
734,122 + -0.2
734,140 + +1.5
734,835 - 16002 mRNA_7634 0.56 -1.6
734,840 + 16002 mRNA_7634 0.57 +0.1
735,165 + 16002 mRNA_7634 0.84 +1.8
735,266 - +0.8
735,274 + +0.3
735,429 + -0.3
735,440 + -1.5
735,454 - +1.6

Or see this region's nucleotide sequence