Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7638

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16005 and 16006 are separated by 173 nucleotides16006 and 16007 are separated by 827 nucleotides mRNA_7637: 16005 - K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1, at 741,048 to 741,985 16005 mRNA_7638: 16006 - HMMPfam-Subunit 17 of Mediator complex-PF10156, at 742,159 to 744,441 16006 mRNA_7639: 16007 - K11095 SNRPC U1 small nuclear ribonucleoprotein C, at 745,269 to 745,635 16007

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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741,183 + 16005 mRNA_7637 0.14 -0.3
743,432 + 16006 mRNA_7638 0.56 -0.4
744,806 - +1.7

Or see this region's nucleotide sequence