Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7656

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16023 and 16024 are separated by 458 nucleotides16024 and 16025 are separated by 241 nucleotides mRNA_7655: 16023 - K12194 CHMP4, SNF7, VPS32 charged multivesicular body protein 4, at 778,145 to 779,164 16023 mRNA_7656: 16024 - Hypothetical Protein, at 779,623 to 780,980 16024 mRNA_7657: 16025 - KOG2743 Cobalamin synthesis protein, at 781,222 to 782,891 16025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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778,665 - 16023 mRNA_7655 0.51 -2.6
779,371 - +1.2
779,389 - -0.2
779,436 + +1.3
779,687 + -0.8
779,878 - 16024 mRNA_7656 0.19 +0.9
781,128 - -0.7
781,130 - +0.7
781,138 + -0.6
781,159 - -0.1
781,469 + 16025 mRNA_7657 0.15 -0.7
781,715 + 16025 mRNA_7657 0.30 +0.2

Or see this region's nucleotide sequence