Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7679

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16046 and 16047 are separated by 151 nucleotides mRNA_7678: 16046 - K00657 speG diamine N-acetyltransferase, at 821,386 to 822,078 16046 mRNA_7679: 16047 - K12861 BCAS2 pre-mRNA-splicing factor SPF27, at 822,230 to 823,111 16047

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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821,351 + +1.0
821,724 + 16046 mRNA_7678 0.49 +0.1
821,824 + 16046 mRNA_7678 0.63 +2.1
821,827 + 16046 mRNA_7678 0.64 +0.6
821,974 + 16046 mRNA_7678 0.85 +0.0
822,093 - +0.1
822,869 - 16047 mRNA_7679 0.72 -0.6
823,043 - +0.7
823,118 - +0.6
823,120 + -0.3
823,130 - +0.3
823,132 - -0.6
823,144 + +0.9
823,150 + -0.1
823,157 + +0.8
823,329 + +0.3
823,476 - +0.2
823,555 - +0.3
823,575 + +0.0
823,712 + +0.3
823,831 - +3.0
823,871 + -0.8
823,957 - +0.1
823,974 - +2.7
823,995 - +0.5
823,996 - -0.3
823,999 - -0.1
824,000 - +1.2
824,004 + -0.8
824,032 + -0.5
824,034 + +2.0
824,034 - +0.9
824,035 + +1.6
824,046 + +0.5
824,050 + +1.5
824,055 + +1.9

Or see this region's nucleotide sequence