Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7686

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16053 and 16054 are separated by 817 nucleotides16054 and 16055 are separated by 153 nucleotides mRNA_7685: 16053 - Hypothetical Protein, at 835,020 to 835,589 16053 mRNA_7686: 16054 - K06185 ABCF2 ATP-binding cassette, subfamily F, member 2, at 836,407 to 838,350 16054 mRNA_7687: 16055 - SUPERFAMILY--SSF48371, at 838,504 to 840,672 16055

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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835,423 - 16053 mRNA_7685 0.71 +0.1
835,433 + 16053 mRNA_7685 0.72 -1.0
835,485 - 16053 mRNA_7685 0.82 +0.5
835,547 - -0.9
835,552 + -0.4
835,868 + -0.6
835,870 + +0.2
835,875 - +1.7
835,877 + +0.1
835,886 + +1.3
836,004 - -0.7
838,272 + -0.2
838,484 + -1.0
838,565 - -0.1
838,622 + +2.6
838,724 - 16055 mRNA_7687 0.10 -1.8
839,003 - 16055 mRNA_7687 0.23 -0.0
839,004 - 16055 mRNA_7687 0.23 -2.4
839,046 + 16055 mRNA_7687 0.25 +1.6
839,148 + 16055 mRNA_7687 0.30 -0.2
839,162 - 16055 mRNA_7687 0.30 -0.3
839,291 + 16055 mRNA_7687 0.36 +0.4

Or see this region's nucleotide sequence