Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7690

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16057 and 16058 are separated by 519 nucleotides16058 and 16059 are separated by 439 nucleotides mRNA_7689: 16057 - BLAST triacylglycerol lipase [Pochonia chlamydosporia 170], at 844,796 to 845,727 16057 mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846,247 to 848,747 16058 mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849,187 to 849,939 16059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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845,281 + 16057 mRNA_7689 0.52 +1.4
845,370 - 16057 mRNA_7689 0.62 +2.0
845,373 - 16057 mRNA_7689 0.62 +0.7
845,510 - 16057 mRNA_7689 0.77 +0.9
845,586 + 16057 mRNA_7689 0.85 -0.7
845,696 + +0.4
845,704 + +1.8
845,713 - +0.7
845,728 + -0.1
845,826 + -0.3
845,864 + +0.6
845,871 - +0.6
845,878 + -1.3
845,966 - +0.2
845,997 + -0.2
845,998 - -0.3
846,005 - -0.1
846,020 + +0.4
846,038 - -1.6
846,299 + -0.4
846,386 - +2.6
846,498 - 16058 mRNA_7690 0.10 +0.8
846,666 - 16058 mRNA_7690 0.17 +0.4
846,677 + 16058 mRNA_7690 0.17 +0.6
846,854 - 16058 mRNA_7690 0.24 -0.4
846,854 - 16058 mRNA_7690 0.24 -1.8
846,854 - 16058 mRNA_7690 0.24 +0.8
846,870 + 16058 mRNA_7690 0.25 +0.4
846,873 + 16058 mRNA_7690 0.25 +0.3
847,023 + 16058 mRNA_7690 0.31 -0.5
847,177 + 16058 mRNA_7690 0.37 +0.5
847,183 + 16058 mRNA_7690 0.37 -0.7
847,331 + 16058 mRNA_7690 0.43 -0.4
847,641 - 16058 mRNA_7690 0.56 +0.6
847,747 - 16058 mRNA_7690 0.60 +0.1
847,755 - 16058 mRNA_7690 0.60 -0.3
847,811 + 16058 mRNA_7690 0.63 -1.6
847,899 + 16058 mRNA_7690 0.66 +0.8
847,912 - 16058 mRNA_7690 0.67 +0.3
848,233 - 16058 mRNA_7690 0.79 -0.2
848,233 + 16058 mRNA_7690 0.79 +1.8
848,330 - 16058 mRNA_7690 0.83 -0.5
848,336 - 16058 mRNA_7690 0.84 +0.5
848,511 - +1.2
848,515 + +0.8
848,520 - +0.6
848,631 - -0.2
848,643 + -0.1
848,652 - -0.2
848,755 + -0.5
848,786 - +2.0
848,909 + -0.2
848,936 - +0.5
848,981 + -0.2
849,129 - -0.0
849,137 - +0.1
849,242 - +0.3
849,341 - 16059 mRNA_7691 0.20 +1.5
849,385 - 16059 mRNA_7691 0.26 +0.6
849,394 - 16059 mRNA_7691 0.27 +0.1
849,399 - 16059 mRNA_7691 0.28 -0.9
849,471 + 16059 mRNA_7691 0.38 -0.7
849,506 + 16059 mRNA_7691 0.42 +0.9
849,506 - 16059 mRNA_7691 0.42 +0.4
849,594 + 16059 mRNA_7691 0.54 +0.3

Or see this region's nucleotide sequence