Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7697

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16064 and 16065 are separated by 268 nucleotides16065 and 16066 are separated by 409 nucleotides mRNA_7696: 16064 - K11269 CTF18, CHL12 chromosome transmission fidelity protein 18, at 858,944 to 862,198 16064 mRNA_7697: 16065 - K00815 TAT tyrosine aminotransferase, at 862,467 to 863,875 16065 mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332 16066

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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861,541 + 16064 mRNA_7696 0.80 +1.2
861,592 - 16064 mRNA_7696 0.81 +0.6
862,328 - +0.2
862,369 + -0.1
862,372 - -0.1
862,393 - +1.6
862,603 + +0.3
862,674 - 16065 mRNA_7697 0.15 -0.7
862,835 - 16065 mRNA_7697 0.26 -0.5
862,855 + 16065 mRNA_7697 0.28 +0.6
862,856 - 16065 mRNA_7697 0.28 +0.5
862,857 + 16065 mRNA_7697 0.28 +1.0
863,128 + 16065 mRNA_7697 0.47 +0.9
863,235 - 16065 mRNA_7697 0.55 -1.8
863,282 - 16065 mRNA_7697 0.58 +0.3
863,402 - 16065 mRNA_7697 0.66 -0.1
863,578 - 16065 mRNA_7697 0.79 +1.2
863,581 + 16065 mRNA_7697 0.79 +0.9
863,588 + 16065 mRNA_7697 0.80 +1.0
863,664 - 16065 mRNA_7697 0.85 +0.7
863,677 + 16065 mRNA_7697 0.86 +0.5
863,709 - 16065 mRNA_7697 0.88 -0.4
863,710 + 16065 mRNA_7697 0.88 +1.0
863,734 + 16065 mRNA_7697 0.90 +0.2
863,974 + +1.3
863,980 + +1.6
863,984 + +1.6
863,996 - +0.6
864,000 + +0.9
864,004 - +0.3
864,017 + +0.4
864,020 - +0.2
864,027 - +2.4
864,033 + +1.8
864,034 - +0.1
864,036 + +1.9
864,060 - +0.1
864,061 + +1.6
864,062 + -0.4
864,076 - +1.3
864,076 - +1.6
864,083 - +0.5
864,086 - -0.3
864,089 + -1.0
864,089 + -0.8
864,118 - -0.3
864,118 - +0.6
864,118 + +1.1
864,235 + +0.3
864,245 + +0.9
864,318 - +0.3
864,361 - +0.5
864,371 - +0.4
864,382 - -0.5
864,794 - 16066 mRNA_7698 0.49 +0.6

Or see this region's nucleotide sequence